PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC034855.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

bHLH

Protein Properties

Length: 169aa MW: 19147 Da PI: 10.051

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC034855.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	34.2	4.4e-11	13	59	5	54
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + rE+ RRdr+N++f eL ++l + + +K +K++iL Av+ + +L EcC034855.10 13 KACREKLRRDRLNERFLELGSILEPG---RPPKTDKSAILSDAVRMVTQL 59 678********************8...89************99988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.925	8	59	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.4E-8	12	59	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.18E-7	12	64	No hit	No description
SMART	SM00353	8.2E-9	14	65	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	7.46E-14	14	84	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.3E-13	15	82	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009055	Molecular Function	electron carrier activity
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 169 aa Download sequence Send to blast
RLKSESCLSS GSKACREKLR RDRLNERFLE LGSILEPGRP PKTDKSAILS DAVRMVTQLR 60 TEAQKLKESN EELQEKIKEL KAEKNELRDE KQRLKADKEK LEQQLKVSSF HPVFPPHPSV 120 VSTPFAAQER AGGNKLMPYI GFPGVAMWQF MPPSTVDTSQ DHVLRPPVA

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010035617.1	1e-121	PREDICTED: transcription factor ILR3-like
Swissprot	Q9FH37	6e-82	ILR3_ARATH; Transcription factor ILR3
TrEMBL	A0A059A151	1e-121	A0A059A151_EUCGR; Uncharacterized protein
STRING	VIT_12s0059g02650.t01	1e-96	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G54680.1	7e-78	bHLH family protein